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• Front cover
• Contents
• Editor
• Contributors
• Chapter 1: Algorithms for Bioinformatics
• Chapter 2: Introduction to GPGPUs andMassively Threaded Programming
• Chapter 3: FPGA: Architecture and Programming
• Chapter 4: Parallel Algorithms forAlignments on the Cell BE
• Chapter 5: Orchestrating the PhylogeneticLikelihood Function on EmergingParallel Architectures
• Chapter 6: Parallel Bioinformatics Algorithmsfor CUDA-Enabled GPUs
• Chapter 7: CUDA Error Correction Method forHigh-Throughput Short-Read Sequencing Data
• Chapter 8: FPGA Acceleration of SeededSimilarity Searching
• Chapter 9: Seed-Based Parallel Protein SequenceComparison Combining Multithreading,GPU, and FPGA Tec
• Chapter 10: Database Searching with Profi le-HiddenMarkov Models on Reconfi gurableand Many-Core Arc
• Chapter 11: COPACOBANA: A Massively ParallelFPGA-Based Computer Architecture
• Chapter 12: Accelerating String Set Matching forBioinformatics Using FPGA Hardware
• Chapter 13: Reconfi gurable Neural System and ItsApplication to Dimeric ProteinBinding Site Identifi
• Chapter 14: Parallel FPGA Search Enginefor Protein Identification
• Index
• Back cover